# API Documentation

`PairPlots.pairplot`

— Function`pairplot(inputs...; figure=(;), kwargs...)`

Convenience method to generate a new Makie figure with resolution (800,800) and then call `pairplot`

as usual. Returns the figure.

Example:

`fig = pairplot(table)`

`pairplot(gridpos::Makie.GridPosition, inputs...; kwargs...)`

Create a pair plot at a given grid position of a Makie figure.

Example

```
fig = Figure()
pairplot(fig[2,3], table)
fig
```

`pairplot(gridpos::Makie.GridLayout, inputs...; kwargs...)`

Convenience function to create a reasonable pair plot given one or more inputs that aren't full specified. Wraps input tables in PairPlots.Series() with a distinct color specified for each series.

Here are the defaults applied for a single data table:

```
pairplot(fig[1,1], table) == # approximately the following:
pairplot(
PairPlots.Series(table, color=Makie.RGBA(0., 0., 0., 0.5)) => (
PairPlots.HexBin(colormap=Makie.cgrad([:transparent, :black]),bins=32),
PairPlots.Scatter(filtersigma=2),
PairPlots.Contour(),
PairPlots.MarginDensity(
color=:transparent,
color=:black,
linewidth=1.5f0
),
PairPlots.MarginConfidenceLimits()
)
)
```

Here are the defaults applied for 2 to 5 data tables:

```
pairplot(fig[1,1], table1, table2) == # approximately the following:
pairplot(
PairPlots.Series(table1, color=Makie.wong_colors(0.5)[1]) => (
PairPlots.Scatter(filtersigma=2),
PairPlots.Contourf(),
PairPlots.MarginDensity(
linewidth=2.5f0
)
),
PairPlots.Series(table2, color=Makie.wong_colors(0.5)[2]) => (
PairPlots.Scatter(filtersigma=2),
PairPlots.Contourf(),
PairPlots.MarginDensity(
linewidth=2.5f0
)
),
)
```

For 6 or more tables, the defaults are approximately:

```
PairPlots.Series(table1, color=Makie.wong_colors(0.5)[series_i]) => (
PairPlots.Contour(sigmas=[1]),
PairPlots.MarginDensity(
linewidth=2.5f0
)
)
```

`pairplot(gridpos::Makie.GridLayout, inputs...; kwargs...)`

Main PairPlots function. Create a pair plot by plotting into a grid layout within a Makie figure.

Inputs should be one or more `Pair`

of PairPlots.AbstractSeries => tuple of VizType.

Additional arguments:

- labels: customize the axes labels with a Dict of column name (symbol) to string, Makie rich text, or LaTeX string.
- diagaxis: customize the Makie.Axis of plots along the diagonal with a named tuple of keyword arguments.
- bodyaxis: customize the Makie.Axis of plots under the diagonal with a named tuple of keyword arguments.
- axis: customize the axes by parameter using a Dict of column name (symbol) to named tuple of axis settings.
`x`

and`y`

are automatically prepended based on the parameter and subplot. For global properties, see`diagaxis`

and`bodyaxis`

. - legend: additional keyword arguments to the Legend constructor, used if one or more series are labelled. You can of course also create your own Legend and inset it into the Figure for complete control.

**Examples**

Basic usage:

```
table = (;a=randn(1000), b=randn(1000), c=randn(1000))
pairplot(table)
```

Customize labels:

`pairplot(table, labels=Dict(:a=>L"\sum{a^2}"))`

Use a pseudo log scale for one variable:

`pairplot(table, axis=(; a=(;scale=Makie.pseudolog10) ))`

`PairPlots.AbstractSeries`

— Type`AstractSeries`

Represents some kind of series in PairPlots.

`PairPlots.Series`

— Type`Series(data; label=nothing, kwargs=...)`

A data series in PairPlots. Wraps a Tables.jl compatible table. You can optionally pass a label for this series to use in the plot legend. Keyword arguments are forwarded to every plot call for this series.

Examples:

`ser = Series(table; label="series 1", color=:red)`

`Series(matrix::AbstractMatrix; label=nothing, kwargs...)`

Convenience constructor to build a Series from an abstract matrix. The columns are named accordingly to the axes of the Matrix (usually :1 though N).

`PairPlots.Truth`

— Type`Truth(truths; labels=nothing, kwargs=...)`

Mark a set of "true" values given by `truths`

which should be either a named tuple, Dict, etc that can be indexed by the column name and returns a value or values.

`PairPlots.VizType`

— Type" A type of PairPlots vizualization.

`PairPlots.VizTypeBody`

— Type" A type of PairPlots vizualization that compares two variables.

`PairPlots.VizTypeDiag`

— Type" VizTypeBody

A type of PairPlots vizualization that only shows one variable. Used for the plots along the diagonal.

`PairPlots.HexBin`

— Type`HexBin(;kwargs...)`

Plot two variables against eachother using a Makie Hex Bin series. `kwargs`

are forwarded to the plot function and can be used to control the number of bins and the appearance.

`PairPlots.Hist`

— Type```
Hist(;kwargs...)
Hist(histprep_function; kwargs...)
```

Plot two variables against eachother using a 2D histogram heatmap. `kwargs`

are forwarded to the plot function and can be used to control the number of bins and the appearance.

You can optionally pass a function to override how the histogram is calculated. It should have the signature: `prepare_hist(xs, ys, nbins)`

and return a vector of horizontal bin centers, vertical bin centers, and a matrix of weights.

Your `prepare_hist`

function it does not have to obey `nbins`

`PairPlots.Contour`

— Type`Contour(;sigmas=1:2, bandwidth=1.0, kwargs...)`

Plot two variables against eachother using a contour plot. The contours cover the area under a Gaussian given by `sigmas`

, which must be `<: AbstractVector`

. `kwargs`

are forwarded to the plot function and can be used to control the appearance.

KernelDensity.jl is used to produce smoother contours. The bandwidth of the KDE is chosen automatically by that package, but you can scale the bandwidth used up or down by a constant factor by passing `bandwidth`

when creating the series. For example, `bandwidth=2.0`

will double the KDE bandwidth and result in smoother contours.

Contours are calculated using Contour.jl and plotted as a Makie line series.

See also: Contourf

`PairPlots.Contourf`

— Type`Contourf(;sigmas=1:2, bandwidth=1.0, kwargs...)`

Plot two variables against eachother using a filled contour plot. The contours cover the area under a Gaussian given by `sigmas`

, which must be `<: AbstractVector`

. `kwargs`

are forwarded to the plot function and can be used to control the appearance.

KernelDensity.jl is used to produce smoother contours. The bandwidth of the KDE is chosen automatically by that package, but you can scale the bandwidth used up or down by a constant factor by passing `bandwidth`

when creating the series. For example, `bandwidth=2.0`

will double the KDE bandwidth and result in smoother contours.

KernelDensity.jl is used to produce smoother contours.

See also: Contour

`PairPlots.Scatter`

— Type`Scatter(;kwargs...)`

Plot two variables against eachother using a scatter plot.`kwargs`

are forwarded to the plot function and can be used to control the appearance.

`PairPlots.MarginConfidenceLimits`

— Type`MarginConfidenceLimits(;titlefmt="$\mathrm{%.2f^{+%.2f}_{-%.2f}}$", kwargs...)`

`PairPlots.MarginHist`

— Type```
MarginHist(;kwargs...)
MarginHist(histprep_function; kwargs...)
```

Plot a marginal filled histogram of a single variable along the diagonal of the grid. `kwargs`

are forwarded to the plot function and can be used to control the number of bins and the appearance.

You can optionally pass a function to override how the histogram is calculated. It should have the signature: `prepare_hist(xs, nbins)`

and return a vector of bin centers and a vector of weights.

Your `prepare_hist`

function it does not have to obey `nbins`

`PairPlots.MarginStepHist`

— Type```
MarginStepHist(;kwargs...)
MarginStepHist(histprep_function; kwargs...)
```

Plot a marginal histogram without filled columns of a single variable along the diagonal of the grid. `kwargs`

are forwarded to the plot function and can be used to control the number of bins and the appearance.

You can optionally pass a function to override how the histogram is calculated. It should have the signature: `prepare_hist(xs, nbins)`

and return a vector of bin centers and a vector of weights.

Your `prepare_hist`

function it does not have to obey `nbins`

`PairPlots.MarginDensity`

— Type`MarginDensity(;kwargs...)`

Plot the smoothed marginal density of a variable along the diagonal of the grid, using Makie's `density`

function. `kwargs`

are forwarded to the plot function and can be used to control the appearance.